MantisBT - Visomics
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0012664Visomics[All Projects] Generalpublic2012-01-06 15:412012-01-06 15:41
Brian Helba 
 
normalminorhave not tried
newopen 
0012664: Installation: automate environment setup and R external packages
We should not have to require our users to manually edit their environment variables. Can this be done from a script?

We also do not need to have users open R and manually run GetRExternalPackages.R. Since R will have been added to $PATH, we can set up a batch script to run GetRExternalPackages.R using "R CMD BATCH". Note that GetRExternalPackages.R should be slightly modified, removing the "write()" functions, as these can cause problems when running from a raw shell.
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2012-01-06 15:41Matthew BowmanNew Issue

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